IL_5AFI_057
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGAAG*CUAAGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_057 not in the Motif Atlas
- Geometric match to IL_9AXU_113
- Geometric discrepancy: 0.2126
- The information below is about IL_9AXU_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74322.1
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AFI|1|A|G|1416||||P_1
5AFI|1|A|C|1417||||P_1
5AFI|1|A|G|1418||||P_1
5AFI|1|A|A|1419||||P_1
5AFI|1|A|A|1420||||P_1
5AFI|1|A|G|1421||||P_1
*
5AFI|1|A|C|1577||||P_1
5AFI|1|A|U|1578||||P_1
5AFI|1|A|A|1579||||P_1
5AFI|1|A|A|1580||||P_1
5AFI|1|A|G|1581||||P_1
5AFI|1|A|C|1582||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: