IL_5AFI_111
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 5AFI|1|A|A|2765||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_111 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0804
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5AFI|1|A|G|2737||||P_1
5AFI|1|A|A|2738||||P_1
5AFI|1|A|U|2739||||P_1
5AFI|1|A|A|2740||||P_1
5AFI|1|A|A|2741||||P_1
5AFI|1|A|G|2742||||P_1
*
5AFI|1|A|C|2762||||P_1
5AFI|1|A|G|2763||||P_1
5AFI|1|A|A|2764||||P_1
5AFI|1|A|A|2765||||P_1
5AFI|1|A|A|2766||||P_1
5AFI|1|A|C|2767||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain J
- 50S ribosomal protein L13
Coloring options: