IL_5AFI_118
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_118 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.1429
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5AFI|1|B|G|23||||P_1
5AFI|1|B|G|24||||P_1
5AFI|1|B|U|25||||P_1
5AFI|1|B|C|26||||P_1
5AFI|1|B|C|27||||P_1
5AFI|1|B|C|28||||P_1
*
5AFI|1|B|G|56||||P_1
5AFI|1|B|A|57||||P_1
5AFI|1|B|A|58||||P_1
5AFI|1|B|A|59||||P_1
5AFI|1|B|C|60||||P_1
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
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