IL_5AFI_146
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5AFI|1|a|A|532||||P_1, 5AFI|1|a|U|534||||P_1
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_146 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.124
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5AFI|1|a|G|515||||P_1
5AFI|1|a|PSU|516||||P_1
5AFI|1|a|G|517||||P_1
5AFI|1|a|C|518||||P_1
5AFI|1|a|C|519||||P_1
5AFI|1|a|A|520||||P_1
5AFI|1|a|G|521||||P_1
*
5AFI|1|a|C|528||||P_1
5AFI|1|a|G|529||||P_1
5AFI|1|a|G|530||||P_1
5AFI|1|a|U|531||||P_1
5AFI|1|a|A|532||||P_1
5AFI|1|a|A|533||||P_1
5AFI|1|a|U|534||||P_1
5AFI|1|a|A|535||||P_1
5AFI|1|a|C|536||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
- Chain x
- mRNA
- Chain y
- Transfer RNA; tRNA
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