IL_5AFI_147

3D structure

PDB id

5AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

5AFI|1|a|A|572||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AFI_147 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1002

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5AFI|1|a|C|569||||P_1
5AFI|1|a|G|570||||P_1
5AFI|1|a|U|571||||P_1
5AFI|1|a|A|572||||P_1
5AFI|1|a|A|573||||P_1
5AFI|1|a|A|574||||P_1
5AFI|1|a|G|575||||P_1
*
5AFI|1|a|C|880||||P_1
5AFI|1|a|G|881||||P_1

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17