IL_5AFI_188

3D structure

PDB id

5AFI (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AFI_188 not in the Motif Atlas

Homologous match to IL_5WT1_001

Geometric discrepancy: 0.2858

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

5AFI|1|y|A|26||||P_1
5AFI|1|y|G|27||||P_1
*
5AFI|1|y|C|43||||P_1
5AFI|1|y|G|44||||P_1
5AFI|1|y|U|45||||P_1

Current chains

Chain y

A/T-site Phe-tRNAPhe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain l

30S ribosomal protein S12