IL_5AFI_211
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AFI_211 not in the Motif Atlas
- Homologous match to IL_4LFB_070
- Geometric discrepancy: 0.3399
- The information below is about IL_4LFB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31531.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 13
Unit IDs
5AFI|1|a|5MC|1407||||P_1
5AFI|1|a|A|1408||||P_1
5AFI|1|a|C|1409||||P_1
*
5AFI|1|a|G|1491||||P_1
5AFI|1|a|A|1492||||P_1
5AFI|1|a|A|1493||||P_1
5AFI|1|a|G|1494||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain x
- mRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: