IL_5AJ0_020

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34138.1

Basepair signature

cWW-L-R-bif-cWW

Number of instances in this motif group

4

Unit IDs

5AJ0|1|A2|C|450
5AJ0|1|A2|G|451
5AJ0|1|A2|C|452
5AJ0|1|A2|C|453
*
5AJ0|1|A2|G|689
5AJ0|1|A2|C|690
5AJ0|1|A2|G|691
5AJ0|1|A2|G|692

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L6

Chain Ae

60S ribosomal protein L32

Chain At

60S ribosomal protein L28