3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGCCG*CCGGCGAC
Length
13 nucleotides
Bulged bases
5AJ0|1|A2|C|660
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_34871.1
Basepair signature
cWW-L-R-cSS-L-R-R-R-cWW
Number of instances in this motif group
1

Unit IDs

5AJ0|1|A2|G|481
5AJ0|1|A2|G|482
5AJ0|1|A2|C|483
5AJ0|1|A2|C|484
5AJ0|1|A2|G|485
*
5AJ0|1|A2|C|656
5AJ0|1|A2|C|657
5AJ0|1|A2|G|658
5AJ0|1|A2|G|659
5AJ0|1|A2|C|660
5AJ0|1|A2|G|661
5AJ0|1|A2|A|662
5AJ0|1|A2|C|663

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AC
60S ribosomal protein L4
Chain At
60S ribosomal protein L28

Coloring options:

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