IL_5AJ0_044

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGGU*GUUACAGCC

Length

15 nucleotides

Bulged bases

5AJ0|1|A2|A|737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08860.1

Basepair signature

cWW-tHW-L-R-R-R-R-R-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|736
5AJ0|1|A2|A|737
5AJ0|1|A2|A|738
5AJ0|1|A2|G|739
5AJ0|1|A2|G|740
5AJ0|1|A2|U|741
*
5AJ0|1|A2|G|899
5AJ0|1|A2|U|900
5AJ0|1|A2|U|901
5AJ0|1|A2|A|902
5AJ0|1|A2|C|903
5AJ0|1|A2|A|904
5AJ0|1|A2|G|905
5AJ0|1|A2|C|906
5AJ0|1|A2|C|907

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a