IL_5AJ0_055

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUC*GGGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73029.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5AJ0|1|A2|G|1408
5AJ0|1|A2|G|1409
5AJ0|1|A2|A|1410
5AJ0|1|A2|U|1411
5AJ0|1|A2|C|1412
*
5AJ0|1|A2|G|1437
5AJ0|1|A2|G|1438
5AJ0|1|A2|G|1439
5AJ0|1|A2|C|1440
5AJ0|1|A2|A|1441
5AJ0|1|A2|C|1442

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L18

Chain Ab

60S ribosomal protein L29