IL_5AJ0_058

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_058 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.1274

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5AJ0|1|A2|G|1452
5AJ0|1|A2|U|1453
5AJ0|1|A2|C|1454
*
5AJ0|1|A2|G|1474
5AJ0|1|A2|G|1475
5AJ0|1|A2|U|1476

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L18

Chain Ab

60S ribosomal protein L29

Chain Ao

60S ribosomal protein L36a