IL_5AJ0_061

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

5AJ0|1|A2|A|1632, 5AJ0|1|A2|G|1636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28684.1

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

12

Unit IDs

5AJ0|1|A2|G|1504
5AJ0|1|A2|A|1505
5AJ0|1|A2|A|1506
5AJ0|1|A2|A|1507
5AJ0|1|A2|G|1508
*
5AJ0|1|A2|C|1630
5AJ0|1|A2|U|1631
5AJ0|1|A2|A|1632
5AJ0|1|A2|G|1633
5AJ0|1|A2|U|1634
5AJ0|1|A2|A|1635
5AJ0|1|A2|G|1636
5AJ0|1|A2|C|1637

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Aa

60S ribosomal protein L27a

Chain Aj

60S ribosomal protein L37