IL_5AJ0_066

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

5AJ0|1|A2|G|1607, 5AJ0|1|A2|A|1619, 5AJ0|1|A2|A|1620

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03097.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

5AJ0|1|A2|G|1606
5AJ0|1|A2|G|1607
5AJ0|1|A2|G|1608
*
5AJ0|1|A2|U|1618
5AJ0|1|A2|A|1619
5AJ0|1|A2|A|1620
5AJ0|1|A2|U|1621
5AJ0|1|A2|C|1622

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AN

60S ribosomal protein L15

Chain AP

60S ribosomal protein L17

Chain Aj

60S ribosomal protein L37

Chain By

Nascent protein chain