IL_5AJ0_069

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCGCCCACG*CG

Length

12 nucleotides

Bulged bases

5AJ0|1|A2|C|1680, 5AJ0|1|A2|C|1699, 5AJ0|1|A2|C|1700, 5AJ0|1|A2|A|1701

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|C|1676
5AJ0|1|A2|U|1677
5AJ0|1|A2|C|1678
5AJ0|1|A2|G|1679
5AJ0|1|A2|C|1680
5AJ0|1|A2|C|1699
5AJ0|1|A2|C|1700
5AJ0|1|A2|A|1701
5AJ0|1|A2|C|1702
5AJ0|1|A2|G|1703
*
5AJ0|1|A2|C|1822
5AJ0|1|A2|G|1823

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L4

Chain AF

60S ribosomal protein L7

Chain AQ

60S ribosomal protein L18

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29