IL_5AJ0_079

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

5AJ0|1|A2|G|1797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_079 not in the Motif Atlas

Homologous match to IL_5TBW_045

Geometric discrepancy: 0.1933

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

125

Unit IDs

5AJ0|1|A2|C|1796
5AJ0|1|A2|G|1797
5AJ0|1|A2|C|1798
*
5AJ0|1|A2|G|1805
5AJ0|1|A2|G|1806

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29