3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGCCCGAUGC*GGG
Length
13 nucleotides
Bulged bases
5AJ0|1|A2|G|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33457.1
Basepair signature
cWW-L-L-L-tSW-L-cWW-cWW
Number of instances in this motif group
1

Unit IDs

5AJ0|1|A2|C|1892
5AJ0|1|A2|G|1893
5AJ0|1|A2|C|1894
5AJ0|1|A2|C|1895
5AJ0|1|A2|C|1896
5AJ0|1|A2|G|1897
5AJ0|1|A2|A|1898
5AJ0|1|A2|U|1899
5AJ0|1|A2|G|1900
5AJ0|1|A2|C|1901
*
5AJ0|1|A2|G|2044
5AJ0|1|A2|G|2045
5AJ0|1|A2|G|2046

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AF
60S ribosomal protein L7
Chain AM
60S ribosomal protein L14
Chain AO
60S ribosomal protein L13a
Chain AS
60S ribosomal protein L18a
Chain Af
60S ribosomal protein L35a

Coloring options:

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