IL_5AJ0_085

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

5AJ0|1|A2|U|1911, 5AJ0|1|A2|C|1912, 5AJ0|1|A2|G|2036, 5AJ0|1|A2|A|2038

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19883.1

Basepair signature

cWW-tWW-L-tWW-tWH-cWW

Number of instances in this motif group

5

Unit IDs

5AJ0|1|A2|C|1907
5AJ0|1|A2|U|1908
5AJ0|1|A2|C|1909
5AJ0|1|A2|A|1910
5AJ0|1|A2|U|1911
5AJ0|1|A2|C|1912
5AJ0|1|A2|A|1913
5AJ0|1|A2|G|1914
*
5AJ0|1|A2|C|2034
5AJ0|1|A2|U|2035
5AJ0|1|A2|G|2036
5AJ0|1|A2|G|2037
5AJ0|1|A2|A|2038
5AJ0|1|A2|G|2039

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L9

Chain AM

60S ribosomal protein L14

Chain AO

60S ribosomal protein L13a

Chain AS

60S ribosomal protein L18a

Chain Am

Ubiquitin-60S ribosomal protein L40