IL_5AJ0_090

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGG,CCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_090 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.1709

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

5AJ0|1|A2|A|1948
5AJ0|1|A2|G|1949
5AJ0|1|A2|G|1950
*
5AJ0|1|A2|C|1999
5AJ0|1|A2|C|2000
5AJ0|1|A2|U|2001

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

60S acidic ribosomal protein P0