IL_5AJ0_097

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29698.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

21

Unit IDs

5AJ0|1|A2|G|2337
5AJ0|1|A2|U|2338
5AJ0|1|A2|A|2339
5AJ0|1|A2|G|2340
5AJ0|1|A2|U|2341
5AJ0|1|A2|A|2342
5AJ0|1|A2|G|2343
*
5AJ0|1|A2|C|3829
5AJ0|1|A2|G|3830
5AJ0|1|A2|A|3831
5AJ0|1|A2|A|3832
5AJ0|1|A2|A|3833
5AJ0|1|A2|C|3834

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4

Chain AP

60S ribosomal protein L17