IL_5AJ0_100

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

5AJ0|1|A2|A|2491, 5AJ0|1|A2|A|2492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5AJ0|1|A2|C|2425
5AJ0|1|A2|U|2426
5AJ0|1|A2|G|2427
5AJ0|1|A2|A|2428
5AJ0|1|A2|G|2429
*
5AJ0|1|A2|C|2488
5AJ0|1|A2|G|2489
5AJ0|1|A2|A|2490
5AJ0|1|A2|A|2491
5AJ0|1|A2|A|2492
5AJ0|1|A2|G|2493

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L8

Chain Ag

60S ribosomal protein L34

Chain Aj

60S ribosomal protein L37

Chain Al

60S ribosomal protein L39