IL_5AJ0_104

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

5AJ0|1|A2|G|2523, 5AJ0|1|A2|U|2524, 5AJ0|1|A2|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62295.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

400

Unit IDs

5AJ0|1|A2|G|2521
5AJ0|1|A2|A|2522
5AJ0|1|A2|G|2523
5AJ0|1|A2|U|2524
5AJ0|1|A2|G|2525
5AJ0|1|A2|G|2526
*
5AJ0|1|A2|C|2751
5AJ0|1|A2|G|2752
5AJ0|1|A2|C|2753

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ak

60S ribosomal protein L38