IL_5AJ0_105

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

5AJ0|1|A2|U|2748

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_105 not in the Motif Atlas

Geometric match to IL_6JQ6_006

Geometric discrepancy: 0.1909

The information below is about IL_6JQ6_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5AJ0|1|A2|G|2528
5AJ0|1|A2|G|2529
*
5AJ0|1|A2|C|2747
5AJ0|1|A2|U|2748
5AJ0|1|A2|C|2749

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L34