IL_5AJ0_106

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

5AJ0|1|A2|C|2568
5AJ0|1|A2|G|2569
5AJ0|1|A2|A|2570
5AJ0|1|A2|U|2571
5AJ0|1|A2|C|2572
*
5AJ0|1|A2|G|2731
5AJ0|1|A2|G|2732
5AJ0|1|A2|G|2733
5AJ0|1|A2|A|2734
5AJ0|1|A2|G|2735

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AG

60S ribosomal protein L7a

Chain AZ

60S ribosomal protein L27

Chain Ag

60S ribosomal protein L34