IL_5AJ0_118

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_118 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.1424

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5AJ0|1|A2|G|2868
5AJ0|1|A2|C|2869
5AJ0|1|A2|U|2870
*
5AJ0|1|A2|A|3581
5AJ0|1|A2|A|3582
5AJ0|1|A2|C|3583

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BI

40S ribosomal protein S8