IL_5AJ0_121

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

5AJ0|1|A2|A|3634, 5AJ0|1|A2|U|3650, 5AJ0|1|A2|C|3654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73044.1

Basepair signature

cWW-R-tSS-tWW-tWW-cWW

Number of instances in this motif group

7

Unit IDs

5AJ0|1|A2|C|3631
5AJ0|1|A2|G|3632
5AJ0|1|A2|A|3633
5AJ0|1|A2|A|3634
5AJ0|1|A2|G|3635
5AJ0|1|A2|G|3636
*
5AJ0|1|A2|U|3648
5AJ0|1|A2|G|3649
5AJ0|1|A2|U|3650
5AJ0|1|A2|U|3651
5AJ0|1|A2|G|3652
5AJ0|1|A2|A|3653
5AJ0|1|A2|C|3654
5AJ0|1|A2|G|3655

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain Ap

60S ribosomal protein L37a

Chain B1

Small subunit ribosomal RNA; SSU rRNA