IL_5AJ0_124

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

5AJ0|1|A2|A|3682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15812.1

Basepair signature

cWW-cWW-L-R-L-L-cWW

Number of instances in this motif group

3

Unit IDs

5AJ0|1|A2|C|3679
5AJ0|1|A2|U|3680
5AJ0|1|A2|G|3681
5AJ0|1|A2|A|3682
5AJ0|1|A2|A|3683
5AJ0|1|A2|U|3684
5AJ0|1|A2|G|3685
*
5AJ0|1|A2|C|3710
5AJ0|1|A2|G|3711
5AJ0|1|A2|C|3712
5AJ0|1|A2|G|3713

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain Bw

Transfer RNA; tRNA