IL_5AJ0_128

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

5AJ0|1|A2|A|3756, 5AJ0|1|A2|C|3762, 5AJ0|1|A2|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62969.1

Basepair signature

cWW-L-R-cHW-L-L-L-L-L-cWW

Number of instances in this motif group

9

Unit IDs

5AJ0|1|A2|C|3752
5AJ0|1|A2|C|3753
5AJ0|1|A2|A|3754
5AJ0|1|A2|A|3755
5AJ0|1|A2|A|3756
5AJ0|1|A2|U|3757
5AJ0|1|A2|G|3758
5AJ0|1|A2|C|3759
5AJ0|1|A2|C|3760
5AJ0|1|A2|U|3761
5AJ0|1|A2|C|3762
5AJ0|1|A2|G|3763
*
5AJ0|1|A2|C|3779
5AJ0|1|A2|G|3780
5AJ0|1|A2|C|3781
5AJ0|1|A2|G|3782

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain B1

Small subunit ribosomal RNA; SSU rRNA