IL_5AJ0_137

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGUGUAGAAUAA*UACUC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96534.1

Basepair signature

cWW-L-R-L-cWS-L-R-L-L-tWH-L-L-L-L-cWW

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|3924
5AJ0|1|A2|A|3925
5AJ0|1|A2|G|3926
5AJ0|1|A2|G|3927
5AJ0|1|A2|U|3928
5AJ0|1|A2|G|3929
5AJ0|1|A2|U|3930
5AJ0|1|A2|A|3931
5AJ0|1|A2|G|3932
5AJ0|1|A2|A|3933
5AJ0|1|A2|A|3934
5AJ0|1|A2|U|3935
5AJ0|1|A2|A|3936
5AJ0|1|A2|A|3937
*
5AJ0|1|A2|U|4025
5AJ0|1|A2|A|4026
5AJ0|1|A2|C|4027
5AJ0|1|A2|U|4028
5AJ0|1|A2|C|4029

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Au

60S ribosomal protein L10a

Chain Bw

Transfer RNA; tRNA