IL_5AJ0_139

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

5AJ0|1|A2|G|4054, 5AJ0|1|A2|G|4056, 5AJ0|1|A2|G|4057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97868.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

5

Unit IDs

5AJ0|1|A2|G|4052
5AJ0|1|A2|U|4053
5AJ0|1|A2|G|4054
5AJ0|1|A2|A|4055
5AJ0|1|A2|G|4056
5AJ0|1|A2|G|4057
5AJ0|1|A2|C|4058
*
5AJ0|1|A2|G|4123
5AJ0|1|A2|C|4124
5AJ0|1|A2|U|4125
5AJ0|1|A2|C|4126

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AA

60S ribosomal protein L8

Chain AG

60S ribosomal protein L7a

Chain AX

60S ribosomal protein L23a