IL_5AJ0_143

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01903.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5AJ0|1|A2|C|4205
5AJ0|1|A2|A|4206
5AJ0|1|A2|G|4207
*
5AJ0|1|A2|C|4225
5AJ0|1|A2|G|4226
5AJ0|1|A2|U|4227
5AJ0|1|A2|G|4228
5AJ0|1|A2|G|4229

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S ribosomal protein L5

Chain AJ

60S ribosomal protein L11

Chain AT

60S ribosomal protein L21