IL_5AJ0_163

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93416.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5AJ0|1|A2|U|4594
5AJ0|1|A2|G|4595
5AJ0|1|A2|U|4596
5AJ0|1|A2|A|4597
5AJ0|1|A2|U|4598
5AJ0|1|A2|G|4599
*
5AJ0|1|A2|C|4624
5AJ0|1|A2|G|4625
5AJ0|1|A2|A|4626
5AJ0|1|A2|A|4627
5AJ0|1|A2|G|4628

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AW

60S ribosomal protein L24

Chain Ad

60S ribosomal protein L31