IL_5AJ0_168

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGC*GGAACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67859.1

Basepair signature

cWW-cWS-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

5AJ0|1|A2|G|4704
5AJ0|1|A2|G|4705
5AJ0|1|A2|A|4706
5AJ0|1|A2|G|4707
5AJ0|1|A2|C|4708
*
5AJ0|1|A2|G|4911
5AJ0|1|A2|G|4912
5AJ0|1|A2|A|4913
5AJ0|1|A2|A|4914
5AJ0|1|A2|C|4915
5AJ0|1|A2|C|4916

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Af

60S ribosomal protein L35a