IL_5AJ0_173

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_173 not in the Motif Atlas

Geometric match to IL_5TBW_046

Geometric discrepancy: 0.3096

The information below is about IL_5TBW_046

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5AJ0|1|A2|G|4855
5AJ0|1|A2|G|4856
5AJ0|1|A2|G|4857
*
5AJ0|1|A2|C|4879
5AJ0|1|A2|C|4880
5AJ0|1|A2|C|4881

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14