IL_5AJ0_181

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50444.1

Basepair signature

cWW-tSW-cSS-tWS-cWW

Number of instances in this motif group

2

Unit IDs

5AJ0|1|A2|A|4972
5AJ0|1|A2|G|4973
5AJ0|1|A2|A|4974
5AJ0|1|A2|G|4975
*
5AJ0|1|A2|C|4990
5AJ0|1|A2|G|4991
5AJ0|1|A2|A|4992
5AJ0|1|A2|U|4993

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain BI

40S ribosomal protein S8