IL_5AJ0_193

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

5AJ0|1|B1|A|516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_193 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3297

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

5AJ0|1|B1|C|37
5AJ0|1|B1|A|38
5AJ0|1|B1|A|39
5AJ0|1|B1|A|40
*
5AJ0|1|B1|U|514
5AJ0|1|B1|G|515
5AJ0|1|B1|A|516
5AJ0|1|B1|C|517
5AJ0|1|B1|G|518

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BJ

40S ribosomal protein S9