3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUGAC*GGAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_204 not in the Motif Atlas
Geometric match to IL_5J7L_274
Geometric discrepancy: 0.2551
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_08257.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

5AJ0|1|B1|C|188
5AJ0|1|B1|U|189
5AJ0|1|B1|G|190
5AJ0|1|B1|A|191
5AJ0|1|B1|C|192
*
5AJ0|1|B1|G|207
5AJ0|1|B1|G|208
5AJ0|1|B1|A|209
5AJ0|1|B1|U|210
5AJ0|1|B1|G|211

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BI
40S ribosomal protein S8

Coloring options:


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