IL_5AJ0_210
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- 5AJ0|1|B1|U|368, 5AJ0|1|B1|C|369
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_210 not in the Motif Atlas
- Geometric match to IL_5Y58_001
- Geometric discrepancy: 0.3053
- The information below is about IL_5Y58_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45649.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|B1|U|366
5AJ0|1|B1|U|367
5AJ0|1|B1|U|368
5AJ0|1|B1|C|369
5AJ0|1|B1|G|370
5AJ0|1|B1|A|371
*
5AJ0|1|B1|U|393
5AJ0|1|B1|G|394
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AR
- 60S ribosomal protein L19
- Chain BI
- 40S ribosomal protein S8
- Chain BL
- 40S ribosomal protein S11
Coloring options: