IL_5AJ0_215
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UCCC*GGGGA
- Length
- 9 nucleotides
- Bulged bases
- 5AJ0|1|B1|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_215 not in the Motif Atlas
- Geometric match to IL_4WF9_110
- Geometric discrepancy: 0.356
- The information below is about IL_4WF9_110
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_47959.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AJ0|1|B1|U|495
5AJ0|1|B1|C|496
5AJ0|1|B1|C|497
5AJ0|1|B1|C|498
*
5AJ0|1|B1|G|504
5AJ0|1|B1|G|505
5AJ0|1|B1|G|506
5AJ0|1|B1|G|507
5AJ0|1|B1|A|508
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4, Y isoform 1
- Chain BJ
- 40S ribosomal protein S9
- Chain BY
- 40S ribosomal protein S24
Coloring options: