IL_5AJ0_217

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

5AJ0|1|B1|A|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_217 not in the Motif Atlas

Geometric match to IL_7RQB_101

Geometric discrepancy: 0.2428

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

5AJ0|1|B1|U|530
5AJ0|1|B1|A|531
*
5AJ0|1|B1|U|553
5AJ0|1|B1|A|554
5AJ0|1|B1|A|555

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain Be

40S ribosomal protein S30