IL_5AJ0_232

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUC,GAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_232 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.1754

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

5AJ0|1|B1|U|882
5AJ0|1|B1|U|883
5AJ0|1|B1|C|884
*
5AJ0|1|B1|G|902
5AJ0|1|B1|A|903
5AJ0|1|B1|A|904

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BL

40S ribosomal protein S11