3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_239 not in the Motif Atlas
Homologous match to IL_4V88_435
Geometric discrepancy: 0.174
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

5AJ0|1|B1|A|1042
5AJ0|1|B1|G|1043
5AJ0|1|B1|G|1044
5AJ0|1|B1|U|1045
5AJ0|1|B1|U|1046
5AJ0|1|B1|C|1047
*
5AJ0|1|B1|G|1071
5AJ0|1|B1|U|1072
5AJ0|1|B1|U|1073

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain A2
Large subunit ribosomal RNA; LSU rRNA
Chain AA
60S ribosomal protein L8
Chain Ap
60S ribosomal protein L37a
Chain BO
40S ribosomal protein S14
Chain Ba
40S ribosomal protein S26

Coloring options:


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