IL_5AJ0_243

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_243 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.2516

The information below is about IL_4WF9_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74602.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5AJ0|1|B1|U|1101
5AJ0|1|B1|G|1102
5AJ0|1|B1|C|1103
*
5AJ0|1|B1|G|1129
5AJ0|1|B1|G|1130
5AJ0|1|B1|G|1131

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain BN

40S ribosomal protein S13

Chain Ba

40S ribosomal protein S26

Chain Bb

40S ribosomal protein S27