IL_5AJ0_244
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- 5AJ0|1|B1|C|1109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_244 not in the Motif Atlas
- Homologous match to IL_8P9A_427
- Geometric discrepancy: 0.5705
- The information below is about IL_8P9A_427
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
5AJ0|1|B1|G|1108
5AJ0|1|B1|C|1109
5AJ0|1|B1|G|1110
*
5AJ0|1|B1|C|1123
5AJ0|1|B1|C|1124
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BB
- 40S ribosomal protein S3a
- Chain BR
- 40S ribosomal protein S17-like
- Chain Bb
- 40S ribosomal protein S27
Coloring options: