3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCG*CC
Length
5 nucleotides
Bulged bases
5AJ0|1|B1|C|1109
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_244 not in the Motif Atlas
Homologous match to IL_8P9A_427
Geometric discrepancy: 0.5705
The information below is about IL_8P9A_427
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

5AJ0|1|B1|G|1108
5AJ0|1|B1|C|1109
5AJ0|1|B1|G|1110
*
5AJ0|1|B1|C|1123
5AJ0|1|B1|C|1124

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BB
40S ribosomal protein S3a
Chain BR
40S ribosomal protein S17-like
Chain Bb
40S ribosomal protein S27

Coloring options:


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