3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGA*UU
Length
5 nucleotides
Bulged bases
5AJ0|1|B1|G|1207
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_247 not in the Motif Atlas
Homologous match to IL_4V88_442
Geometric discrepancy: 0.2936
The information below is about IL_4V88_442
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
49

Unit IDs

5AJ0|1|B1|G|1206
5AJ0|1|B1|G|1207
5AJ0|1|B1|A|1208
*
5AJ0|1|B1|U|1691
5AJ0|1|B1|U|1692

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain Ba
40S ribosomal protein S26
Chain Bx
mRNA

Coloring options:


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