IL_5AJ0_248

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCA,UGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_248 not in the Motif Atlas

Geometric match to IL_4J50_002

Geometric discrepancy: 0.172

The information below is about IL_4J50_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5AJ0|1|B1|G|1212
5AJ0|1|B1|C|1213
5AJ0|1|B1|A|1214
*
5AJ0|1|B1|U|1685
5AJ0|1|B1|G|1686
5AJ0|1|B1|C|1687

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BC

40S ribosomal protein S2

Chain Bv

Transfer RNA; tRNA

Chain Bw

Transfer RNA; tRNA