IL_5AJ0_250

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5AJ0_250 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.1665

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5AJ0|1|B1|C|1230
5AJ0|1|B1|C|1231
5AJ0|1|B1|U|1232
*
5AJ0|1|B1|G|1526
5AJ0|1|B1|C|1527
5AJ0|1|B1|G|1528

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BQ

40S ribosomal protein S16

Chain BS

40S ribosomal protein S18

Chain BT

40S ribosomal protein S19

Chain BU

40S ribosomal protein S20

Chain Bv

Transfer RNA; tRNA