IL_5AJ0_251
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_251 not in the Motif Atlas
- Homologous match to IL_4V88_445
- Geometric discrepancy: 0.2943
- The information below is about IL_4V88_445
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
5AJ0|1|B1|G|1235
5AJ0|1|B1|G|1236
*
5AJ0|1|B1|C|1521
5AJ0|1|B1|A|1522
5AJ0|1|B1|C|1523
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BP
- 40S ribosomal protein S15
- Chain BQ
- 40S ribosomal protein S16
- Chain BS
- 40S ribosomal protein S18
- Chain BZ
- 40S ribosomal protein S25
- Chain Bf
- Ubiquitin-40S ribosomal protein S27a
- Chain Bv
- Transfer RNA; tRNA
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