3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
5AJ0|1|B1|C|1331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_257 not in the Motif Atlas
Homologous match to IL_4V88_450
Geometric discrepancy: 0.1945
The information below is about IL_4V88_450
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.2
Basepair signature
cWW-L-cWS-cWW
Number of instances in this motif group
4

Unit IDs

5AJ0|1|B1|U|1329
5AJ0|1|B1|G|1330
5AJ0|1|B1|C|1331
5AJ0|1|B1|A|1332
5AJ0|1|B1|U|1333
*
5AJ0|1|B1|A|1498
5AJ0|1|B1|U|1499
5AJ0|1|B1|G|1500

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BD
40S ribosomal protein S3
Chain BK
40S ribosomal protein S10
Chain BU
40S ribosomal protein S20
Chain Bd
40S ribosomal protein S29
Chain Bf
Ubiquitin-40S ribosomal protein S27a
Chain Bx
mRNA

Coloring options:


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