IL_5AJ0_262
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 5AJ0|1|B1|G|1398
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5AJ0_262 not in the Motif Atlas
- Geometric match to IL_6CZR_168
- Geometric discrepancy: 0.2545
- The information below is about IL_6CZR_168
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67743.1
- Basepair signature
- cWW-cWW-cWH-cWW
- Number of instances in this motif group
- 9
Unit IDs
5AJ0|1|B1|C|1395
5AJ0|1|B1|A|1396
5AJ0|1|B1|U|1397
5AJ0|1|B1|G|1398
5AJ0|1|B1|C|1399
*
5AJ0|1|B1|G|1447
5AJ0|1|B1|A|1448
5AJ0|1|B1|G|1449
5AJ0|1|B1|G|1450
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BQ
- 40S ribosomal protein S16
- Chain BR
- 40S ribosomal protein S17-like
- Chain BU
- 40S ribosomal protein S20
- Chain Bg
- Guanine nucleotide-binding protein subunit beta-2-like 1
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