3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
5AJ0|1|B1|G|1398
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5AJ0_262 not in the Motif Atlas
Geometric match to IL_6CZR_168
Geometric discrepancy: 0.2545
The information below is about IL_6CZR_168
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_67743.1
Basepair signature
cWW-cWW-cWH-cWW
Number of instances in this motif group
9

Unit IDs

5AJ0|1|B1|C|1395
5AJ0|1|B1|A|1396
5AJ0|1|B1|U|1397
5AJ0|1|B1|G|1398
5AJ0|1|B1|C|1399
*
5AJ0|1|B1|G|1447
5AJ0|1|B1|A|1448
5AJ0|1|B1|G|1449
5AJ0|1|B1|G|1450

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BQ
40S ribosomal protein S16
Chain BR
40S ribosomal protein S17-like
Chain BU
40S ribosomal protein S20
Chain Bg
Guanine nucleotide-binding protein subunit beta-2-like 1

Coloring options:


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